Fix compile errors on workload bwa and benchmark jetstream (#3617)
Error was reported when building jetstream benchmark with emsdk:
```
clang: error: unsupported option '-msse2' for target 'wasm32-wasi'
```
Error was reported when building bwa workload:
```
fatal: reference is not a tree: 139f68fc4c3747813783a488aef2adc86626b01b
```