Wenyong Huang
c254bffbc5
Fix compile errors on workload bwa and benchmark jetstream (#3617)
|
1 年之前 | |
|---|---|---|
| .. | ||
| .gitignore | 5 年之前 | |
| CMakeLists.bwa_wasm.txt | 2 年之前 | |
| CMakeLists.txt | 1 年之前 | |
| README.md | 1 年之前 | |
| bwa.patch | 4 年之前 | |
README.md
"bwa" sample introduction
This sample demonstrates how to build bwa into WebAssembly with simd support and run it with iwasm.
Preparation
please refer to installation instructions.
Build
$ mkdir build && cd build
$ cmake ..
$ make
# to verify
$ ls bwa.wasm
Download sample data
Download the bwa-0.7.15 binary package from such an address, a sample data file named hs38DH.fa will be used later.
If want more data, please refer to http://hgdownload.cse.ucsc.edu/goldenpath/hg19/bigZips/
Run workload
Firstly please build iwasm with simd support:
$ cd <wamr dir>/product-mini/platforms/linux/
$ mkdir build && cd build
$ cmake ..
$ make
Then compile wasm file to aot file and run:
$ cd <wamr dir>/samples/workload/bwa/build
$ <wamr dir>/wamr-compiler/build/wamrc -o bwa.aot bwa.wasm
$ <wamr dir>/product-mini/platforms/linux/iwasm --dir=. bwa.aot index hs38DH-extra.fa